From scientific communication to public knowledge : the scientific article web published as a knowledge base

Marcondes, Carlos Henrique From scientific communication to public knowledge : the scientific article web published as a knowledge base., 2005 . In International Conference on Electronic Publishing, 9th, ICCC ElPub, Leuven (Belgium), 8-10 June, 2005. [Conference paper]

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English abstract

Linking Electronic published scientific articles to Web ontologies is a cognitive tool of which its impacts and possibilities are far from being evaluated. The objective of this research is to investigate the potential of Web published scientific articles, conceived not only as texts, but also as a machine readable knowledge base, explicitly and formally related to Web-based public ontologies, that represent the assented knowledge of a specific domain. A prospective survey is developed to identify similar proposals and innovative experiences in electronically publishing scientific articles, authoring tools and citation analysis. Scientific methodology is also reviewed looking for structural characteristics of the scientific method presented in the written text of scientific articles. Experiences in developing Markup Language for some specific areas of knowledge, such as Chemical Markup Language, Mathematics Markup Language and Biology Markup Language, are also reviewed. An electronic publishing process is outlined which would permit the electronic publishing of not only scientific articles as full-texts, but would also enables an author to formalize the “deep structure” of a scientific article, containing assumptions, hypotheses, methodology, citations, datasets used, conclusions and contributions. All these elements are published as a knowledge base, using XML language, thus outlining a Sm-ML, a Scientific methodology Markup Language. Concepts expressed in the different parts of a Scientific article are to be linked to public Web ontologies, thus enabling the establishment of a formal relationship between the Scientific article specific knowledge base to ontologies like the UMLS – the Unified Medical Language System (http://www.nlm.nih.gov/pubs/factsheet/umls.html). The citations of an article are also be linked to the cited Web published scientific articles as qualified citations, in which the reasons to cite and the relationship between this specific scientific article and its citations are made explicit. The proposed model can enhances the scientific communication process, permitting semantic retrieval, critical inquiring, semantic citation, comparison, coherence verification and validating of a scientific article against public Web ontologies, which express the assented knowledge of a scientific area. The model was also conceived as the base for developing enhanced authoring and retrieval tools.

Portuguese abstract

Linking Electronic published scientific articles to Web ontologies is a cognitive tool of which its impacts and possibilities are far from being evaluated. The objective of this research is to investigate the potential of Web published scientific articles, conceived not only as texts, but also as a machine readable knowledge base, explicitly and formally related to Web-based public ontologies, that represent the assented knowledge of a specific domain. A prospective survey is developed to identify similar proposals and innovative experiences in electronically publishing scientific articles, authoring tools and citation analysis. Scientific methodology is also reviewed looking for structural characteristics of the scientific method presented in the written text of scientific articles. Experiences in developing Markup Language for some specific areas of knowledge, such as Chemical Markup Language, Mathematics Markup Language and Biology Markup Language, are also reviewed. An electronic publishing process is outlined which would permit the electronic publishing of not only scientific articles as full-texts, but would also enables an author to formalize the “deep structure” of a scientific article, containing assumptions, hypotheses, methodology, citations, datasets used, conclusions and contributions. All these elements are published as a knowledge base, using XML language, thus outlining a Sm-ML, a Scientific methodology Markup Language. Concepts expressed in the different parts of a Scientific article are to be linked to public Web ontologies, thus enabling the establishment of a formal relationship between the Scientific article specific knowledge base to ontologies like the UMLS – the Unified Medical Language System (http://www.nlm.nih.gov/pubs/factsheet/umls.html). The citations of an article are also be linked to the cited Web published scientific articles as qualified citations, in which the reasons to cite and the relationship between this specific scientific article and its citations are made explicit. The proposed model can enhances the scientific communication process, permitting semantic retrieval, critical inquiring, semantic citation, comparison, coherence verification and validating of a scientific article against public Web ontologies, which express the assented knowledge of a scientific area. The model was also conceived as the base for developing enhanced authoring and retrieval tools.

Item type: Conference paper
Keywords: Katholieke Universiteit Leuven
Subjects: I. Information treatment for information services > ID. Knowledge representation.
Depositing user: Carlos Marcondes
Date deposited: 29 Mar 2006
Last modified: 02 Oct 2014 12:02
URI: http://hdl.handle.net/10760/7389

References

Berners-Lee, Tim, Hendler, James, Lassila., Ora. (2001) The semantic web. Scientific American, May, 2001. Available in <http://www.scian.com/2001/0501issue/0501berners-lee.html>. Accessed in May 24 2001.

Bush, Vannevar. (1945). As we may think. The Atlantic Monthly, 176, 1, 101-108. Available in <http://wwwtheatlantic.com/unbound/fiasbks/computer/bushf.htm>. Accessed in Jan. 9 2005.

Case, Donald O.; Higgins, Georgeann M. (2000). How can we investigate citation behavior? A study of reasons for citing literature in Communication. Journal of the American Society for Information Science, 51, 7, .635-645. Available at <http://www.periodicos.capes.gov.br>. Accessed in Sept. 9 2004.

Chomsky, Noam. (1981). Regras e representações: a inteligência humana e seus produtos. Ed.Zahar.

De Roure, David; Jennings, Nicholas; Shadbolt, Nigel. (2001). Research agenda for the Semantic Grid: a future s-Science infraestructure. (Report commissioned for EPSRC/DTI Core e-Science Programme).

Gross, Alan G. (1990). The Rhetoric of Science. Harvard University Press.

Hucka, Michel; Finney, Andrew; Suro, Hubert; Bolouri, Hahmid. (2003). System Biology Markup Lnaguage (SBML) Level 1: structures and facilities for basic model definitions. <http://www.sbml.org/specifications/sbml-level-1/version-2/sbml-level-1-v2.pdf> . Accessed in Dez. 1, 2004.

Klahr, David; Simon, Herbert A. (1999). Studies of scientific discovery: complementary approaches and convergent fidings. Psycological Bulletin, 124, 5, 524-543. Available in <http://www.psy.cmu.edu/psy/faculty/Kands99.pdf>. Accessed in Mar. 05 2005.

Kircz J. G. (2002). New practices for electronic publishing 2: New forms of the scientific paper. Learned Publishing, 15, 1, 27-32. Available in <http://www.ingentaconnect.com/searching/Expand?pub=infobike://alpsp/lp/2002/00000015/00000001/art00004>. Accessed in Nov. 27 2004.

Klahr, David; Simon, Herbert A. (1999). Studies of scientific discovery: complementary approaches and convergent fidings. Psycological Bulletin, 124, 5, 524-543. Available in <http://www.psy.cmu.edu/psy/faculty/Kands99.pdf>. Accessed in Mar. 05 2005.

Latour, Bruno. (2000). Ciência em ação: como seguir cientistas e engenheiros sociedade afora. Editora UNESP.

Lawrence, Steve. Online or invisible. (2001) Nature, 411, 6837, 521. Available in <http://www.neci.nec.com/~lawrence/papers/online-nature01/>. Acessed in June, 13, 2004.

Lévy, Pierre. (1993). As tecnologias da inteligência: o futuro do pensamento na era da informática. Editora. 34. (Coleção Trans).

Li, Gangmin; Uren, Victoria, Motta, Enrico, Shum, Simon Buckinghan, Dominique, John. (2002). ClaiMaker: weaving a Semantic Web of research papers. Proceedings of the 1 INTERNATIONAL SEMANTIC WEB CONFERENCE, June 2002, Sardinia. Available at <http://kmi.open.ac.uk/projects/scholonto/papers.html>, accessed in June 5, 2004.

Marconi, Marina de Andrade; Lakatos, Eva Maria. (2004). Metodologia científica. Editora Atlas.

Murray-Rust, P; Rzepa H. S. (2002). STMML. A markup language for Scientific, Technical and Medical Publishing. Data Science Journal, 1, 2, 128-193. Available in <http://journals.eecs.qub.ac.uk/codata/journal/contents/1_2/1_2pdfs/ds121.pdf >. Accessed in Dez 1 2004.

Murray-Rust, P; Rzepa H. S. (1999). Chemical Markup, XML and the worldwide web. I: basic principles. Journal of Chemical Information and Computer Science, 39, 928-942.

Oliveira, Edgard Costa. (2004). Towards a new authoring environment: overview of some ontology-based systems. In: Jan Engelen (Ed.), Proceedings of the 8th ICCC INTERNATIONAL CONFERENCE ON ELECTRONIC PUBLISHING, pp. 121-130. Dep. of Information Science and Documentation (CID)/UNB.

Rzepa H. S.; Murray-Rust, P. (2001) A new publishing paradigm: STM articles as part of the semantic web. Learned Publishing, 14, 177-182. Available in <http://www.ingentaconnect.com/searching/Expand?pub=infobike://alpsp/lp/2001/00000014/00000003/art00003>. Access in Nov. 30 2004.


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