Information retrieval in medicine: The electronic medical record as a new domain

Smith, Catherine Arnott Information retrieval in medicine: The electronic medical record as a new domain., 2006 . In 69th Annual Meeting of the American Society for Information Science and Technology (ASIST), Austin (US), 3-8 November 2006. [Conference paper]

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English abstract

This paper presents a document-centered approach to electronic health records as an information retrieval problem. It is clear that passage retrieval researchers working in the field of information science have seen similar values in document passages as have researchers in medical informatics. Without either literature acknowledging the other, workers in both camps have identified the same potential in document structure, labels, specificity and explicit hierarchies of knowledge for signaling relevance to the reader. The National Health Information Infrastructure Initiative (http://aspe.hhs.gov/sp/nhii/) identifies academics and researchers as natural stakeholders, like clinicians and caregivers, in enabling better healthcare through better information sharing (National Committee on Vital and Health Statistics, 2003). Information science has much to contribute to the health information technology arena and to electronic health records in particular: their development, their maintenance, and most importantly their improvement to serve the needs of diverse users.

Item type: Conference paper
Keywords: electronic health records ; EHR ; medical records ; information retrieval
Subjects: B. Information use and sociology of information > BH. Information needs and information requirements analysis.
J. Technical services in libraries, archives, museum. > JE. Record keeping.
H. Information sources, supports, channels. > HZ. None of these, but in this section.
Depositing user: Norm Medeiros
Date deposited: 07 Dec 2006
Last modified: 02 Oct 2014 12:05
URI: http://hdl.handle.net/10760/8571

References

Arnott Smith, C. (2003). Effect of XML markup on retrieval of clinical documents. Proceedings/AMIA :614-8.

Berg, M., & Bowker, G. (1997). The multiple bodies of the medical record: Toward a sociology of an artifact. Sociological Quarterly, 38(3), 513-537.

Berg, M., & Goorman, E. (1999). The contextual nature of medical information. International Journal of Medical Informatics, 56, 51-60.

Bergeron, B. (1998). The effect of technology on the written tradition of medicine. Perspectives in Biology and Medicine, 41(4), 572-578.

Bird, L.J., Goodchild, A., & Beale, T. (2000). Integrating health care information using XML-based metadata. HIC 2000. Retrieved February 12, 2006, from http://titanium.dstc.edu.au/papers/HIC2000.pdf.

Blair, D. C. (2002). The challenge of commercial document retrieval, Part II: A strategy for document searching based on identifiable document partitions. Information Processing & Management, 38(2), 293-304.

Callan, J. P. (1994). Passage-level evidence in document retrieval. Proceedings of ACM SIGIR Conference (pp. 302-310). New York: ACM.

Cisco, S.L. (1996). Document imaging in the United States: A survey of several hundred hospital installations. (p. 8). Newton, MA: Medical Records Institute.

Committee on Data Standards for Patient Safety, Institute of Medicine. (2003). Key Capabilities of an Electronic Health Record System: Letter Report. Washington, DC: National Academies Press. Retrieved February 12, 2006, from http://fermat.nap.edu/catalog/10781.html].

Cormack, G., Clarke, C., Palmer, C., & To, S.S.L. (2000). Passage-based query refinement. Information Processing & Management, 36(1), 133-153.

Cui, H., Sun, R., Li, K., Kan, M-Y., & Chua, T-S. (2005). Question answering passage retrieval using dependency relations. SIGIR Forum, 39(2), 400-407.

Dambro, M.R., Weiss, B.D., McClure, C.L., & Vuturo, A.F. (1988). An unsuccessful experience with computerized medical records. Journal of Medical Education, 63(8), 617-623.

Essin, D. J. (1993). Intelligent processing of loosely structured documents as a strategy for organizing electronic health care records. Methods of Information in Medicine, 32, 265-268.

Essin, D. J., & Essin, C. D. (1990). Computerizing medical records: Software criteria for systems to document patient encounters. Critical Care Medicine, 18(1), 100-102.

Fuji, A., Iwayam, M., & Kando, N. (2004). The patent retrieval task in the Fourth NTCIR Workshop. SIGIR Forum, 560-561.

Garfinkel, H., & Bittner, E. (1967). "Good" organizational reasons for "bad" clinic records. In H. Garfinkel (Ed.), Studies in ethnomethodology (pp. 186-207). Englewood Cliffs, NJ: Prentice-Hall.

HL7 [Health Level Seven.] (2005, Oct. 13). HL7 position statement on CCR/CDA Harmonization. Retrieved February 12, 2006, from http://www.hl7.org/documentcenter/public/mou/HL7%20Position%20Statement%20on%20CCR%20updated%20Oct%2014.pdf.

Hearst, M. A., & Plaunt, C. (1993). Subtopic structuring for full-length document access. In Proceedings of the Sixteenth Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 59-68). New York: ACM.

Hersh, W. R. (1996). Information retrieval: A health care perspective. New York: Springer-Verlag.

Hersh, W.R. (1995). The electronic medical record: Promises and problems. Journal of the American Society for Information Science, 46(10), 772-776.

Humphrey, S.M., Rogers, W.J., Kilicoglu, H., Demner-Fushman, D., & Rindflesch, T.C. (2006). Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. Journal of the American Society for Information Science & Technology, 57(1), 96-113.

Jordanova, L. (1995). The social construction of medical knowledge. Social History of Medicine, 8(3):361-381.

Kaszkiel, M., & Zobel, J. (1997). Passage retrieval revisited. SIGIR '97 (pp. 178-185). New York: ACM.

Kleinke, J. (1998). Release 0.0: Clinical information technology in the real world. Health Affairs, 17, 23-38.

Kluge, E.-H. W. (1996). The medical record: Narration and story as a path through patient data. Methods of Information in Medicine, 35, 88-92.

Kohn, L.T., Corrigan, J.M., & Donaldson, M.S. (Eds.) (2000). To Err Is Human: Building a Safer Health System.. Washington, DC: National Academies Press.

Laerum, H., Ellingesen, G., & Faxvaag, A. (2001). Doctors' use of electronic medical records systems in hospitals: Cross sectional survey. BMJ, 323(7325), 1344-1348.

Lalmas, M., & Ruthven, I. (1998). Representing and retrieving structured documents using the Dempster-Shafer theory of evidence: Modelling and evaluation. The Journal of Documentation, 54(5), 529-565.

Lambrix, P., & Shahmehri, N. (2000). Querying documents using content, structure and properties. Journal of Intelligent Information Systems, 15, 287-307.

Leroy, G., & Chen, H. (2005). Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts. Journal of the American Society for Information Science & Technology, 56(5), 457-468.

Lincoln, T. L., & Essin, D. J. 1995. A document processing architecture for electronic medical records. Medinfo, 227-230.

Losee, R. (1996). Text windows and phrases differing by discipline, location in document, and syntactic structure. Information Processing & Management, 32(6), 747.

Marshall, J., Balas, E. A., & Reid, J. C. (1997). Technique for efficient information retrieval in outpatient systems. Journal of the American Medical Informatics Association, 76-80.

Melucci, M. (1998). Passage retrieval: A probabilistic technique. Information Processing & Management, 34(1), 43-67.

Mendonça, E. A., Cimino, J. J., Johnson, S. B., & Seol, Y. H. (2001). Accessing heterogeneous sources of evidence to answer clinical questions. Journal of Biomedical Informatics, 34(2), 85-98.

Moffat, A., Sacks-Davis, R., Wilkinson, R., & Zobel, J. (1994). Retrieval of partial documents. In D. Harman (Ed.), Proceedings of the Second Text Retrieval Conference (TREC-2) (pp. 181-190). Washington, DC: Department of Commerce/NIST.

Montani, M., & Bellazzi, R. (2001). Intelligent knowledge retrieval for decision support in medical applications. Medinfo, 10(Pt 1), 498-502.

National Committee on Vital and Health Statistics (2001). Information for Health: A Strategy for Building the National Health Information Infrastructure. Retrieved February 12, 2006, from http://www.ncvhs.hhs.gov/nhiilayo.pdf.

Nygren, E., Johnson, S., & Henriksson, P. (1992). Reading the medical record: I. Analysis of physicians ways of reading the medical record. Computer Methods and Programs in Biomedicine, 39, 1-12.

O'Connor, J. (1980). Answer-passage retrieval by text searching. Journal of the American Society for Information Science, 31(4), 227-39.

Ondo, K., Wagner, J., & Gale, K. (2002). The electronic medical record: Hype or reality? Journal of Healthcare Information Management, 17(4): p. 2.

Panko, W., Silverstein, J., & Lincoln, T. (1999). Technologies for extracting full value from the electronic patient record. Proceedings of the 32nd Hawaii International Conference on System Sciences. New York: IEEE.

Rees, C. (1981). Records and hospital routine. Atkinson P, & Heath C (Eds.), Medical work: Realities and routines (pp. 55-70) . Farnborough, England: Gower.

Ribeiro-Neto, B., Laender, A.H.F.d.L., & Luciano, R.S. (2001). An experimental study in automatically categorizing medical documents. Journal of the American Society for Information Science & Technology, 52(5), 391-401.

Rossi Mori, A., & Consorti, F. (1999). Structures of clinical information in patient records. Proceedings/AMIA Annual Symposium, 132-6.

Royal College of General Practitioners Health Informatics Task Force. (1999). Scoping the primary care view of the option for the development of the EPR (ScopeEPR). Retrieved February 11, 2006, through Google.com cache: http://www.schin.ncl.ac.uk/rcgp/scopeEPR/report/index22.htm.

Salton, G., & Allan, J. (1993). Selective text utilization and text traversal. Hypertext '93 (pp. 131-144). ACM.

Salton, G., & Buckley, C. (1991). Automatic text structuring and retrieval: Experiments in automatic encyclopedia searching. Proceedings of the 14th International SIGIR. (pp. 21-30). New York: ACM.

Salton, G., Allan, J., & Buckley, C. (1993). Approaches to passage retrieval in full text information systems. SIGIR '93 (pp. 49-55). ACM.

Shaw, W. M., Jr., Wood, J. B., Wood, R. E., & Tibbo, H. R. (1991). The cystic fibrosis database: Content and research opportunities. Library and Information Science Research, 13, 347-366.

Smith, C.A. (2005). Electronic health records: Sharing knowledge while preserving privacy. IBM Center for Healthcare Management Research Report. Retrieved February 12, 2006, from http://www-1.ibm.com/services/us/bcs/html/chm_pubs.html.

Smith, C.A. (2002). The Clinical Document Architecture: XML semantic markup for enhanced clinical information retrieval. (Doctoral dissertation, University of Pittsburgh, Pittsburgh). [Dissertation Abstracts Online, 64/01A , 9.]

Sujansky, W. (1998). A document-centric electronic medical record system with database-centric reporting capabilities. In Toward an Electronic Patient Record '98: Proceedings (Vol. I) (pp. 398-403). Newton, MA: Medical Records Institute.

Swanson DR. Two medical literatures that are logically but not bibliographically connected. JASIS 1987; 38: 228-233.

Tange, H. (1996). How to approach the structuring of the medical record? Toward a model for flexible access to free text medical data. International Journal of Bio-Medical Computing, 42, 27-34.

Tange, H. J., Dreessen, V. A. B., Hasman, A., & Donkers, H. H. L. M. (1997). An experimental electronic medical-record system with multiple views on medical narratives. Computer Methods and Programs in Biomedicine, 54, 157-172.

Tange, H. J., Hasman, A., Robbé, P. F. d. V., & Schouten, H. C. (1997). Medical narratives in electronic medical records. International Journal of Medical Informatics, 46, 7-29.

Tange, H. J., Schouten, H. C., Kester, A. D. M., & Hasman, A. (1998). The granularity of medical narratives and its effect on the speed and completeness of information retrieval. Journal of the American Medical Informatics Association, 5, 571-582.

Tombros, A., & Sanderson, M. (1998). Advantages of query biased summaries in information retrieval. SIGIR '98 (pp. 2-10). New York : ACM.

Wolff, J. E., Flörke, H., & Cremers, A. B. (2000). Searching and browsing collections of structural information. In Proceedings of the IEEE Advances in Digital Libraries, pp. 141-150. New York: IEEE.

Xi, W., & Xu-Rong, R. (2001). Incorporating window-based passage-level evidence in document retrieval. Journal of Information Science, 27(2), 73-88.

Yang, K., Maglaughlin, K., & Newby, G. (2001). Passage feedback with IRIS. Information Processing & Management, 37(3), 521-.


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